I am not sure if this issue is has been resolved but here is the fix. I have been having the same problems for a couple months now until today when I decided to fix it.
When you mentioned OWA that got me thinking because outlook rules are workstation standalone (it will apply if the system and outlook is running) the issue is with OWA. If you have ever modify your rules in OWA you will have the problem.
FIX:
Log onto OWA and go to the options settings.
Go to Rules and try deleting a rule. It should say something like several rules error or something.
LEAVE OWA running and open Outlook.EXE (pretty much just open outlook), preferably, on the computer you set the rules in the first place if you still have it. If not, it is ok.
On your Desktop Outlook, click on Rules and your pop-up should remain up. Delete the olds rules, yes, all of it.
Refresh OWA to make sure all rules have been deleted. If they have, great. If not, repeat the steps again - Log out of OWA, close outlook and open it back up. Now you can create new rules.
OWA Should have no more rules. In the future, make sure you don't make any changes to existing rules in OWA
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Proposed as answer by
Donshackles
Wednesday, February 26, 2014 7:47 PM
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Unproposed as answer by
Donshackles
Wednesday, February 26, 2014 7:47 PM