I am running into an interesting issue. I have manually installed Lync on several systems in our office by just running the setup and walking through the installer prompts with out issue. I have tried to make a silent automatic installer by running the setup.exe /admin command and setting up a .msp via the OCT. The only things I have changed in the OCT is to put an organizational name in, under licensing and user interface accepting the license agreement and setting the display level to none, which checks supress modal.
I have checked under the Configure shortcuts section of OCT and all but the two Telementry shortcuts are marked Yes under the Installed column.
I save out of this and put the msp file in the x86 updates folder as I downloaded the 32bit Lync 2013 software.
If I manually install Lync on a computer by removing the MSP file from the update folder Lync installs fine. If I remove Lync and install it silently with the msp file in the x86 updates folder after the install finishes I have shortcuts for Office 2013 Language Preferences and Office 2013 upload center but I do not have shortcuts to Lync 2013 or Lync Recording Manager in the start menu. If I look under I do not see Lync anywhere under the Office folders.
I am trying to install this on a client running Win7 64bit. I have a mix of 64bit and 32bit clients I ultimately will be deploying this to using SCCM 2012. I have followed the guide here http://www.ronnipedersen.com/configmgr-2012-guides/ in setting up a SCCM deployment. I get the same results if I install via the SCCM deployment or manually run setup. If I include the OCT msp file it does not appear that the acutal application ever installs.